Vijithkumar V
How to leverage GNU parallel to utilize multiple cores while running AUGUSTUS
This post is about parallelizing AUGUSTUS using GNU parallel on a multi-core machine. AUGUSTUS is a powerful gene prediction program.
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Vijithkumar V
Dec 21, 20233 min read
Windows Subsystem for Linux (WSL)
WSL is a powerful tool enabling seamless installation of various Linux distributions on Windows, such as Ubuntu, OpenSUSE, Arch Linux, etc.
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Vijithkumar V
Nov 1, 20235 min read
Running a Windows 10 (x64) virtual machine inside the Ubuntu 23.10
This article discusses about how a guest Windows 10 virtual machine can be installed on an Ubuntu 23.10 host machine.
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Vijithkumar V
Oct 16, 20236 min read
RepeatMasker with Omics Box; an easy way to mask repetitive sequences
Repetitive DNA sequences Repetitive DNA sequences are of two different types: low-complexity repeats and transposable elements. What are...
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Vijithkumar V
Sep 16, 20237 min read
Trimmomatic | Single End sequencing | Working with demo files
Demo files for Trimmomatic were downloaded from “bioinfogp.cnb.csic.es/files/samples/rnaseq/” The files were downloaded by using the...
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Vijithkumar V
Sep 13, 20239 min read
Processing the Raw Reads using Trimmomatic; a Polishing Task Before Genome Assembly
Trimmomatic is performed before genome assembly We have something called raw reads. If it is a paired-end sequencing, we have something...
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Vijithkumar V
Sep 6, 20237 min read
de novo genome assembly using Supernova 2.1.0
de novo genome assembly using Supernova 2.1.0.
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Vijithkumar V
Sep 6, 20234 min read
Article: The Chromium de novo assembly solution.
The de novo assembly solution Chromium de novo solution helps to generate a diploid assembly of a diploid genome, which means it...
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Vijithkumar V
Sep 6, 20233 min read
Will an LVM partition help me achieve an increased storage space? What is the success rate?
I was working on a genome assembly project when I was caught off guard by an issue: the assembly process was terminated due to...
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